- 1
The Eliminator
Overkill recieves an upgrade and becomes The Eliminator, and sets out to destroy the Joes.
- 2
Chunnel
At the unveiling of a new tunnel between England and France, Cobra Commander kidnaps the Queen of England and steals the crown jewels, proclaiming himself King...
- 3
A is for Android
Cobra replaces General Hawk with an android replica...
- 4
El Dorado, The Lost City Of Gold
Grunt and Cobra Commander by search for El Dorado, The Lost City of Gold.
- 5
Long Live Rock & Roll (1)
Cobra plans to destroy New York city by using subliminal messages in Rock and Roll music.
- 6
Long Live Rock & Roll (2)
The Joes race to stop Cobras Rock and Roll scheme...
- 7
The Sludge Factor (1)
Cobra joins forces with the evil Cesspool to pollute the worlds food supplies, and the Joes form the Eco Warriors to combat this new threat...
- 8
The Sludge Factor (2)
The Eco Warriors race to stop Cobra Commander and Cesspool from taking control of the world from their volcano base...
- 9
Messenger from the Deep
Cobra Commander believes a hidden city under the sea will make him rich, but both the Joes and Cobra find out it holds a more dangerous secret...
- 10
Infested Island
Cesspool and Cobra Commander attempt to take over the world with giant insects.
- 11
The Greatest Evil (1)
Cobra and GI. Joe team up to fight a Drug dealer...
- 12
The Greatest Evil (2)
While Duke and his younger brother Falcon have a conflict of their own, Cobra Commander plans to steal the Drug Lord Headmans money reserves.
- 13
The Sword
Storm Shadow, Snake Eyes and Night Creeper leader all race for posession of the mythical sword of destiny...
- 14
Keyboard Warriors
Destro creates a new computer system named the ASP which can control Cobra weapons around the world.
- 15
Shadow of a Doubt
Cobra Commander attempts to lure Storm Shadow back into Cobra...
- 16
Cobra World
Cobra Commander tries to convince the world he has gone straight and opens his own theme park...
- 17
Kindergarten Commandos
Cobra takes control of a school in the hope of training new Cobra recruits from a young age.
- 18
Metal Head's Reunion
Metal-Head goes to his high school reunion in an effort to get a secret armor formula for Cobra...
- 19
Basic Training
In a clip show, General Hawk advises the audience what it takes to become a GI.Joe.
- 20
The Legend of Metal Head
In another clip show episode, Metal Head relates his time in Cobra to the audience.