1Plan Six From Outer Space
With the Technodrome in serious need for new equipment, Bebop and Rocksteady are sent to Earth, disguised in human form, to capture the Channel 6 building and return it to Dimension X.
2Turtles of the Jungle
A professor's new ray-gun causes plants to go wild and his pet ape Jocko to become a giant rampaging monkey. By using the same ray-gun, Donatello is increased to Jocko's size so he can fight the giant ape and save April from him.
3Michaelangelo Toys Around
While trying to see the new toys at the Toy Fair, Michaelangelo stumbles upon a plot to take over a noted toy company.
4Peking Turtle
The Turtles must battle a reanimated Terracotta Army after Shredder steals an energy device shaped like a giant pearl, which is held and guarded by a Jade Dragon.
5Shredder's Mom
New York is in the middle of an induced heat wave caused by Shredder, who must battle the Turtles and deal with his mother, Miyoko Saki, at the same time.
6Four Turtles and a Baby
When General Tragg and his troops attack the Neutrino capital, the Neutrino leaders, Zenter and Gizzla, send their infant daughter Tribble through a portal to Earth, asking the Turtles to look after her, but Tribble causes big trouble for our heroes.
7Turtlemaniac
An eccentric billionaire, Monroe Q. Flem, who is also a collector, wishes to collect every piece of TMNT memorabilia that he can get his evil hands on, including April and the Turtles themselves.
8Rondo in New York
Shredder, Bebop, and Rocksteady are in town to steal a rare new mutagen created by Oswald Dren, a grad student. Some mutagen is accidentally spilled onto a reel of movie film causing monsters to come to life.
9Planet of the Turtles
The Turtles must save the Earth from a massive energy drain and its Apocalyptic result by traveling to another dimension where turtles are the dominant species.
10Name That Toon
A Technodrome computer disguised as an electronic keyboard ends up on Earth, and in the most unlikely of hands.
11Menace, Maestro Please
The Turtles must contend with the "Phantom of the Floxy" while trying to hinder Shredder's latest plan to bring the Technodrome back to earth.
12Superhero for a Day
Gadget Man comes out of retirement after 50 years, but is tricked by Shredder into fighting against the Turtles.
13Back to the Egg
Krang hires a multi-dimentional ring-master who intends on making the Teenage Mutant Ninja Turtles part of his circus by using an anti-aging serum.
14Son of Return of the Fly II
Vengeful Baxter Stockman and an A.I. computer return to Earth from a dimentional limbo and capture the Turtles while luring Shredder into their trap as well.
15Raphael Knocks 'em Dead
Raphael must contend with a mobster named Pinky McFingers when he is kidnapped from a local comedy club.
16Bebop and Rocksteady Conquer the Universe
On their latest trip to Earth, Bebop and Rocksteady steal a machine that makes everyone scared of everything.
17Raphael Meets His Match
Raphael wins a ticket to a costume party on MacDonald Crump's yacht and decides to go disguised as a Teenage Mutant Ninja Turtle.
18Slash the Evil Turtle from Dimension X
Bebop and Rocksteady use Krang's new Mutagen on Bebop's pet turtle Slash so he can do their housework for them. Slash runs away and is conned by an irritated entrepreneur into framing the TMNT.
19Leonardo Lightens Up
A ray-gun makes Leonardo carefree and ignore his responsibilities. This leaves the Turtles defenseless and the city at the mercy of Maestro G Clef, a villain who destroys the city with music.
20Were-Rats from Channel 6
After many failed attempts from his rodent subjects to find food, the Rat King learns of an abandoned canister of mutagen lost in the sewers and claims it for himself.
21Funny, They Shrunk Michaelangelo
While Michaelangelo is testing out a sailboard in the sewers he accidentally gets swept out into the city harbor.
22The Big Zipp Attack
Krang sends Shredder, Bebop and Rocksteady to find Rigidium to repair the Technodrome. A meteorite lands containing a large egg. The egg hatches, revealing a Zipp, a cute little creature that begins to eat the Technodrome.
23Donatello Makes Time
Professor Lloyd Cycloyd, a crazy scientist who escaped from an institution, accidentally discovers the Turtles' lair. He sees Donatello testing out one of his new inventions, a time stopper.
24Farewell, Lotus Blossum
While on their way to a movie, the Turtles rescue the Urn of Chakahachi from two thieves. The thieves pry off a pearl from the Urn before the Turtles get their hands on it.
25Rebel Without a Fin
Dr. Polidorius creates a half-man half-fish named Ray. The Doctor has Ray plant explosives in certain parts of the sewer so that he can sink the city beneath the ocean.
26Rhino-Man
J. Gordon Hungerdunger, a Texas millionaire, is holding a best super-hero contest. The winner of the contest will receive the humongous Malaprop Diamond.
27Michaelangelo Meets Bugman
Michaelangelo meets his favourite comic book hero after he saves a weakened Brick Bradley in the sewers, and then he and Bugman take on the evil Electrozapper together.
28Poor Little Rich Turtle
Krang has come up with yet another brilliant plan to free the Technodrome. The evil alien sends Bebop and Rocksteady to kidnap Buffy Shellhammer, 15 year-old CEO of Shellhammer Chemicals.
29What's Michaelangelo Good For?
The Turtles go along with Michaelangelo and his pet pigeon to the zoo so that Dr. Goodfellow can check the bird out.
30The Dimension X Story
Disguised as humans, Rocksteady and Bebop are sent to attach special trans-dimensional thrusters to the Channel Six Building.
31Donatello's Degree
Donatello gets an invitation to accept his degree personally from Professor Sopho at Sopho University. The only problem is that the invitation is addressed to a Miss Donna Tello.
32The Big Cufflink Caper
The Turtles, bored at the lack of action, decide to investigate when they hear that cufflinks are being stolen around the city.
33Leonardo Versus Tempestra
The Turtles sneak into an arcade in the middle of the night to play video games. Leonardo gets hooked on a game called Tempestra's Revenge.
34Splinter Vanishes
Returning from another mission, the Turtles are shocked to discover their mentor has left the lair, leaving behind only a video taped message.
35Raphael Drives 'em Wild
On his way home from getting pizza Raphael and a cab driver accidentally get exposed to rays from a Personality Transmogrifier.
36Beyond the Donatello Nebula
Donatello has created a device to communicate with distant galaxies. While trying to communicate with the Turtle Nebula Donatello accidentally brings a spaceship to Earth.
37Big Bug Blunder
A fly lands in the mutagen and it increases in size. Not being able to control it, Bebop and Rocksteady send the giant insect to Earth.
38The Foot Soldiers Are Revolting
After Bebop and Rocksteady blow another assignment, Shredder fires them and decides to replace them with an intelligent Foot Soldier named Alpha One.
39Unidentified Flying Leonardo
UFO sightings at an upstate farm town known as High Falls, cause April to investigate. Splinter foresees danger clouding April's visit and sends Leonardo to chaperone.
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Rebel Without a Fin
- 41
Rhino-Man
- 42
Michelangelo Meets Bugman
- 43
Poor Little Rich Turtle
- 44
What's Michelangelo Good For?
- 45
The Dimension X Story
- 46
Donatello's Degree
- 47
The Big Cufflink Caper!
- 48
Leonardo Versus Tempestra
- 49
Splinter Vanishes
- 50
Raphael Drives 'em Wild
- 51
Big Bug Blunder
- 52
Beyond the Donatello Nebula
- 53
The Foot Soldiers Are Revolting
- 54
Unidentified Flying Leonardo